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1.
Development of an amplicon-based sequencing approach in response to the global emergence of mpox.
PLoS Biol
; 21(6): e3002151, 2023 06.
Article
in English
| MEDLINE | ID: mdl-37310918
2.
Clonal Expansion of a Streptococcus pneumoniae Serotype 3 Capsule Variant Sequence Type 700 With Enhanced Vaccine Escape Potential After 13-Valent Pneumococcal Conjugate Vaccine Introduction.
J Infect Dis
; 2024 Mar 26.
Article
in English
| MEDLINE | ID: mdl-38530917
3.
DengueSeq: a pan-serotype whole genome amplicon sequencing protocol for dengue virus.
BMC Genomics
; 25(1): 433, 2024 May 01.
Article
in English
| MEDLINE | ID: mdl-38693476
4.
Novel Multilocus Sequence Typing and Global Sequence Clustering Schemes for Characterizing the Population Diversity of Streptococcus mitis.
J Clin Microbiol
; 61(1): e0080222, 2023 01 26.
Article
in English
| MEDLINE | ID: mdl-36515506
5.
RCandy: an R package for visualizing homologous recombinations in bacterial genomes.
Bioinformatics
; 38(5): 1450-1451, 2022 02 07.
Article
in English
| MEDLINE | ID: mdl-34864895
6.
Rotavirus Genotypes in Hospitalized Children With Acute Gastroenteritis Before and After Rotavirus Vaccine Introduction in Blantyre, Malawi, 1997-2019.
J Infect Dis
; 225(12): 2127-2136, 2022 06 15.
Article
in English
| MEDLINE | ID: mdl-33033832
7.
Daily Rapid Antigen Exit Testing to Tailor University COVID-19 Isolation Policy.
Emerg Infect Dis
; 28(12): 2455-2462, 2022 12.
Article
in English
| MEDLINE | ID: mdl-36417936
8.
Pneumococcal Colonization and Virulence Factors Identified Via Experimental Evolution in Infection Models.
Mol Biol Evol
; 38(6): 2209-2226, 2021 05 19.
Article
in English
| MEDLINE | ID: mdl-33502519
9.
Evaluation of Dried Blood and Cerebrospinal Fluid Filter Paper Spots for Storing and Transporting Clinical Material for the Molecular Diagnosis of Invasive Meningococcal Disease.
Int J Mol Sci
; 23(19)2022 Oct 06.
Article
in English
| MEDLINE | ID: mdl-36233182
10.
Whole genomic comparative analysis of Streptococcus pneumoniae serotype 1 isolates causing invasive and non-invasive infections among children under 5 years in Casablanca, Morocco.
BMC Genomics
; 22(1): 39, 2021 Jan 07.
Article
in English
| MEDLINE | ID: mdl-33413118
11.
Early Signals of Vaccine-driven Perturbation Seen in Pneumococcal Carriage Population Genomic Data.
Clin Infect Dis
; 70(7): 1294-1303, 2020 03 17.
Article
in English
| MEDLINE | ID: mdl-31094423
12.
Genomic analysis of Klebsiella pneumoniae isolates from Malawi reveals acquisition of multiple ESBL determinants across diverse lineages.
J Antimicrob Chemother
; 74(5): 1223-1232, 2019 05 01.
Article
in English
| MEDLINE | ID: mdl-30778540
13.
Emergence of Double- and Triple-Gene Reassortant G1P[8] Rotaviruses Possessing a DS-1-Like Backbone after Rotavirus Vaccine Introduction in Malawi.
J Virol
; 92(3)2018 02 01.
Article
in English
| MEDLINE | ID: mdl-29142125
14.
Comparative Genomic Analysis and In Vivo Modeling of Streptococcus pneumoniae ST3081 and ST618 Isolates Reveal Key Genetic and Phenotypic Differences Contributing to Clonal Replacement of Serotype 1 in The Gambia.
J Infect Dis
; 216(10): 1318-1327, 2017 12 05.
Article
in English
| MEDLINE | ID: mdl-28968897
15.
Genomic Epidemiology of Penicillin-Nonsusceptible Pneumococci with Nonvaccine Serotypes Causing Invasive Disease in the United States.
J Clin Microbiol
; 55(4): 1104-1115, 2017 04.
Article
in English
| MEDLINE | ID: mdl-28100596
16.
Genomic landscape of extended-spectrum ß-lactamase resistance in Escherichia coli from an urban African setting.
J Antimicrob Chemother
; 72(6): 1602-1609, 2017 06 01.
Article
in English
| MEDLINE | ID: mdl-28333330
17.
Understanding pneumococcal serotype 1 biology through population genomic analysis.
BMC Infect Dis
; 16(1): 649, 2016 11 08.
Article
in English
| MEDLINE | ID: mdl-27821148
18.
Comparative Genomic Analysis of Meningitis- and Bacteremia-Causing Pneumococci Identifies a Common Core Genome.
Infect Immun
; 83(10): 4165-73, 2015 Oct.
Article
in English
| MEDLINE | ID: mdl-26259813
19.
High multiple carriage and emergence of Streptococcus pneumoniae vaccine serotype variants in Malawian children.
BMC Infect Dis
; 15: 234, 2015 Jun 20.
Article
in English
| MEDLINE | ID: mdl-26088623
20.
Travel surveillance uncovers dengue virus dynamics and introductions in the Caribbean.
Nat Commun
; 15(1): 3508, 2024 Apr 25.
Article
in English
| MEDLINE | ID: mdl-38664380